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VIZIER viruses list

The following list corresponds to the list of Handled viruses within the VIZIER project.

(Friday 15th April 2005)

Type of sequence.

A: Complete sequence previously unavailable for the virus species. Complete sequence characterisation.

B: Complete sequence previously available for the virus species. New complete sequence of an isolate of interest.

C: Complete sequence previously unavailable for the virus species. Partial sequence characterisation.

D: Complete sequence previously available for the virus species. Partial sequence of an isolate of interest.




B

Partner

NA

Family

Genus

Virus

Type of

sequence

Backup Viruses

P3

ssRNA+

Arteriviridae

Arterivirus

Equine Arteritis (Bucyrus)

D

Other isolate

P3

ssRNA+

Arteriviridae

Arterivirus

Porcine Reproductive and Respiratory

Syndrome Virus (USA)

D

European isolate

P3

ssRNA+

Arteriviridae

Arterivirus

Lactate Dehydrogenase-elevating

Virus

D

_

P3

ssRNA+

Arteriviridae

Arterivirus

Simian Hemorrhagic Fever Virus

D

_

P3

ssRNA+

Coronaviridae

Coronavirus

Human Coronavirus 229E

D

Porcine Epidemic Diarrhea Virus

P3

ssRNA+

Coronaviridae

Coronavirus

Feline Infectious Peritonitis Virus

C

_

P3

ssRNA+

Coronaviridae

Coronavirus

Transmissible gastroenteritis Virus

D

_

P3

ssRNA+

Coronaviridae

Coronavirus

Human Coronavirus OC43

C

_

P3

ssRNA+

Coronaviridae

Coronavirus

Rabbit Coronavirus

A

_

P3

ssRNA+

Coronaviridae

Coronavirus

Mouse Hepatitis Virus

D

_

P3

ssRNA+

Coronaviridae

Coronavirus

Infectious Bronchitis Virus

D

Turkey Coronavirus

P3

ssRNA+

Coronaviridae

Torovirus

Equine Torovirus

C

Bovine Torovirus & Porcine Torovirus

P4

dsRNA

Reoviridae

Coltivirus

Colorado Tick Fever Virus

D

Eyach Virus

P4

dsRNA

Reoviridae

Orbivirus

Great Island Virus

(Kemerovo)

A

Bluetongue Virus

P4

dsRNA

Reoviridae

Orthoreovirus

Mammalian Orthoreovirus

(serotype 3)

D

Other serotype

P4

dsRNA

Reoviridae

Orthoreovirus

Nelson Bay Orthoreovirus

A

_

P4

dsRNA

Reoviridae

Orthoreovirus

Avian Orthoreovirus

A

_

P4

dsRNA

Reoviridae

Orthoreovirus

Baboon Orthoreovirus

A

_

P4

dsRNA

Reoviridae

Orthoreovirus

Ophidian Orthoreovirus

A

_

P4

dsRNA

Reoviridae

Seadornavirus

Liao Ning Virus

A

_

P4

dsRNA

Reoviridae

Seadornavirus

Banna Virus (BAV-Ch)

D

Kadipiro Virus

P4

dsRNA

Reoviridae

Rotavirus

Rotavirus A

D

Rotavirus B

P4

dsRNA

Birnaviridae

Birnavirus

Avian Birnavirus

D

_

P4

ssRNA-

Arenaviridae

Arenavirus (Old world)

Lymphocytic Choriomeningitis

Virus (Armstrong)

D

Other isolate

P4

ssRNA-

Arenaviridae

Arenavirus (Old world)

Lassa Virus (Josiah)

D

Other isolate

P4

ssRNA-

Arenaviridae

Arenavirus (Old world)

Mobala Virus

A

Mopeia Virus

P4

ssRNA-

Arenaviridae

Arenavirus (Old world)

Mopeia Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Old world)

Ippy Virus

A


P4

ssRNA-

Arenaviridae

Arenavirus (Clade A)

Pichinde Virus

D

Other clade A

P4

ssRNA-

Arenaviridae

Arenavirus (Clade A)

Allpahuayo Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Clade A)

Parana Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Clade A)

Pirital Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Clade A)

Flexal Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Clade B)

Guanarito Virus

D

Other clade B

P4

ssRNA-

Arenaviridae

Arenavirus (Clade B)

Junin Virus

D

Other clade B

P4

ssRNA-

Arenaviridae

Arenavirus (Clade B)

Machupo Virus

D

Other clade B

P4

ssRNA-

Arenaviridae

Arenavirus (Clade B)

Sabia Virus

D

Other clade B

P4

ssRNA-

Arenaviridae

Arenavirus (Clade B)

Cupixi Virus

C

Amapari Virus

P4

ssRNA-

Arenaviridae

Arenavirus (Clade B)

Amapari Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Clade C)

Oliveros Virus

C

Latino Virus

P4

ssRNA-

Arenaviridae

Arenavirus (Clade C)

Latino Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Rec)

White Water Arroyo Virus

C

Other recombinant

P4

ssRNA-

Arenaviridae

Arenavirus (Rec)

Tamiami Virus

C


P4

ssRNA-

Arenaviridae

Arenavirus (Rec)

Bear Canyon Virus

C


P4

ssRNA-

Bunyaviridae

Hantavirus

Sin Nombre Virus

D

New York & Andes Virus

P4

ssRNA-

Paramyxoviridae

Metapneumovirus

Human Metapneumovirus

D

Other isolate

P4

ssRNA-

Paramyxoviridae

Morbillivirus

Measles Virus

D

Other isolate

P4

ssRNA-

Paramyxoviridae

Pneumovirus

Human Respiratory Syncytial Virus

Bovine ?

D

Other isolate

P4

ssRNA-

Paramyxoviridae

Respirovirus

Sendai Virus

D

Human Parainfluenza 3 Virus

P4

ssRNA-

Paramyxoviridae

Rubulavirus

Mumps Virus

D

Other isolate

P4

ssRNA-

Bornaviridae

Bornavirus

Borna Disease Virus

D

Other isolate

P4

ssRNA+

Flaviviridae

Flavivirus

Tick-borne Encephalitis Virus

(European subtype)

D

Louping ill Virus (British subtype)

P4

ssRNA+

Flaviviridae

Flavivirus

Gadgets Gully Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Kadam Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Kyasanur Forest Disease Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Langat Virus

D

_

P4

ssRNA+

Flaviviridae

Flavivirus

Omsk Hemorrhagic Fever Virus

D

_

P4

ssRNA+

Flaviviridae

Flavivirus

Powassan Virus

D

_

P4

ssRNA+

Flaviviridae

Flavivirus

Royal Farm Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Karshi Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Meaban Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Saumarez Reef Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Tyuleniy Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Aroa Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Cacipacore Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Koutango Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Japanese Encephalitis Virus

D

Other isolate

P4

ssRNA+

Flaviviridae

Flavivirus

Yaounde Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Kokobera Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Bagaza Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Ilheus Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Israel Turkey Encephalomyelitis

Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Ntaya Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Tembusu Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Zika Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Entebbe bat Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Yokose Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Apoi Virus

D

_

P4

ssRNA+

Flaviviridae

Flavivirus

Cowbone Ridge Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Jutiapa Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Modoc Virus

D

Montana Myotis Leucoencephalitis Virus

P4

ssRNA+

Flaviviridae

Flavivirus

Sal Vieja Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

San Perlita Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Bukalasa bat Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Dakar bat Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Carey Island Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Phnom Penh bat Virus

A

_

P4

ssRNA+

Flaviviridae

Flavivirus

Rio Bravo Virus

D

_

P4

ssRNA+

Flaviviridae

Flavivirus

Tamana bat Virus

D

_

P4

ssRNA+

Flaviviridae

Flavivirus

Cell Fusing Agent Virus

D

Kamiti River Virus

P4

ssRNA+

Flaviviridae

Flavivirus

Sitiawan Virus

D

_

P4

ssRNA+

Flaviviridae

Pestivirus

Bovine Viral Diarrhea Virus

D

Classical Swine fever Virus

P4

ssRNA+

Picornaviridae

Enterovirus

Bovine Enterovirus Virus

D

_

P4

ssRNA+

Picornaviridae

Enterovirus

Porcine Enterovirus A

D

Porcine Enterovirus B

P4

ssRNA+

Picornaviridae

Enterovirus

Human Enterovirus B

(echovirus 30)

D

Enterovirus 73,75,77,78, Echovirus 3, 9, 13,30

P4

ssRNA+

Picornaviridae

Cardiovirus

Theiler Virus

D

Mengo Virus

P4

ssRNA+

Picornaviridae

Aphthovirus

Foot & Mouth Disease Virus

D

Other serotype

P4

ssRNA+

Picornaviridae

Kobuvirus

Aichi Virus

D

_

P4

ssRNA+

Picornaviridae

Teschovirus

Porcine Teschovirus 1

D

_

P4

ssRNA+

Togaviridae

Rubivirus

Rubella Virus

D

Other isolate

P5

ssRNA-

Bunyaviridae

Bunyavirus

California Encephalitis

(Lacrosse)

D

Oropouche & Bunyamwera Virus

P5

ssRNA-

Bunyaviridae

Phlebovirus

Rift Valley Fever Virus

D

Other isolate

P5

ssRNA-

Bunyaviridae

Phlebovirus

Sandfly Fever (Toscana) Virus

D

Other isolate

P5

ssRNA+

Caliciviridae

Lagovirus

Rabbit Hemorrhagic Disease Virus

D

Other isolate

P5

ssRNA+

Caliciviridae

Lagovirus

European Brown Hare Syndrome

Virus

D

Other isolate

P5

ssRNA+

Flaviviridae

Flavivirus

West Nile (Kunjin 1) Virus

D

Related isolate

P5

ssRNA+

Flaviviridae

Flavivirus

West Nile (Uganda) Virus

D

Related isolate

P5

ssRNA+

Flaviviridae

Flavivirus

West Nile (India) Virus

B

_

P5

ssRNA+

Flaviviridae

Flavivirus

West Nile (USA) Virus

D

Related isolate

P5

ssRNA+

Flaviviridae

Flavivirus

West Nile (Russia) Virus

B

_

P5

ssRNA+

Flaviviridae

Flavivirus

Dengue 2 Virus

D

Other isolate

P5

ssRNA+

Flaviviridae

Flavivirus

Dengue 1 Virus

D

Other isolate

P5

ssRNA+

Flaviviridae

Flavivirus

Dengue 3 Virus

D

Other isolate

P5

ssRNA+

Flaviviridae

Flavivirus

Dengue 4 Virus

D

Other isolate

P5

ssRNA+

Flaviviridae

Flavivirus

Kedougou Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Murray Valley Encephalitis Virus

D

Other isolate

P5

ssRNA+

Flaviviridae

Flavivirus

St Louis Encephalitis Virus

D

Other isolate

P5

ssRNA+

Flaviviridae

Flavivirus

Usutu Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Banzi Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Bouboui Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Edge Hill Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Jugra Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Saboya Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Sepik Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Uganda S Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Wesselsbron Virus

A

_

P5

ssRNA+

Flaviviridae

Flavivirus

Yellow Fever (17D) Virus

D

French Neurotropic, French Viscerotropic, Asibi strains

P5

ssRNA+

Togaviridae

Alphavirus

Sindbis Virus

D

Western Equine Encephalitis

P5

ssRNA+

Togaviridae

Alphavirus

Semliki Forest Virus

D

Ross River

P5

ssRNA+

Togaviridae

Alphavirus

Venezuelan Equine Encephalitis

Virus

D

Mucambo (Tonate)

P5

ssRNA+

Togaviridae

Alphavirus

Barmah Forest Virus

D

_

P6

ssRNA+

Picornaviridae

Enterovirus

Human Enterovirus A

(Enterovirus 71)

D

EV 76

Coxsackie A14

P6

ssRNA+

Picornaviridae

Enterovirus

Human Enterovirus B

(not classified)

B

_

P6

ssRNA+

Picornaviridae

Enterovirus

Human Enterovirus C

(Coxsackie A13)

D

_

P6

ssRNA+

Picornaviridae

Enterovirus

Human Enterovirus C

(not classified)

D

_

P6

ssRNA+

Picornaviridae

Enterovirus

Human Enterovirus D

(Enterovirus 68)

B

EV 94

Other strain

P6

ssRNA+

Picornaviridae

Enterovirus

Poliovirus 1

B

Other serotype

P6

ssRNA+

Picornaviridae

Hepatovirus

Hepatitis A Virus (IA)

D

Hepatitis A virus (IB or IIIA)

P6

ssRNA+

Picornaviridae

Parechovirus

Human Parechovirus 1

D

Human Parechovirus 2

P6

ssRNA+

Picornaviridae

Rhinovirus

Human Rhinovirus B

D

Human rhinovirus A

P6

ssRNA+

New family

Hepatitis E-like Virus

Human Hepatitis E virus

D

Swine Hepatitis E Virus

P7

ssRNA-

Bunyaviridae

Hantavirus

Prospect Hill Virus

C


P7

ssRNA-

Bunyaviridae

Hantavirus

Dobrava Virus

(Slovakia)

C

Other isolate or Hantaan & Seoul Virus

P7

ssRNA-

Bunyaviridae

Hantavirus

Dobrava Virus

(Slovenia)

C


P7

ssRNA-

Bunyaviridae

Hantavirus

Puumala Virus

(Sotkamo)

D

Other isolate or Tula Virus

P7

ssRNA-

Bunyaviridae

Hantavirus

Thailand Virus

C

Hantaan

P7

ssRNA-

Bunyaviridae

Hantavirus

Thotapalayam Virus

C

Seoul, Tula

P8

ssRNA-

Rhabdoviridae

?

Perinet

C

_

P8

ssRNA-

Rhabdoviridae

?

Le Dantec, Senegal, 1965

C

_

P8

ssRNA-

Rhabdoviridae

?

Kotonkan, Nigeria, 1967,

C

_

P8

ssRNA-

Rhabdoviridae

?

Charleville

D

_

P8

ssRNA-

Rhabdoviridae

Ephemerovirus

Bovine Ephemeral Fever Virus

(Australia)

D

Adelaide River Virus

P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 1 (France)

B

Other isolate

P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 1 (Thailand)

B


P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 2

(Lagos bat virus)

A

Other isolate

P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 3

(Mokola virus)

D

Other isolate

P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 4

(Duvenhage virus)

A

_

P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 5 (France)

A

Other isolate

P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 5 (Poland)

A


P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 6

(The Netherlands)

A

_

P8

ssRNA-

Rhabdoviridae

Lyssavirus

Genotype 7 (Australia)

D

Other isolate

P8

ssRNA-

Rhabdoviridae

Vesiculovirus

Vesicular Stomatitis

Indiana Virus

D

Vesicular Stomatitis New Jersey Virus

P9

ssRNA-

Bunyaviridae

Nairovirus

Crimean Congo Haemorrhagic

Fever Virus (Africa)

B

Other isolate

P9

ssRNA-

Bunyaviridae

Nairovirus

Crimean Congo Haemorrhagic

Fever Virus (China)

B

_

P9

ssRNA-

Filoviridae

Ebola-like

Reston Ebola Virus

D

Other isolate

P9

ssRNA-

Filoviridae

Ebola-like

Zaire Ebola Virus

(Zaire 1995)

D


P9

ssRNA-

Filoviridae

Ebola-like

Zaire Ebola Virus

(Uganda 1999)

D


P9

ssRNA-

Filoviridae

Ebola-like

Zaire Ebola Virus

(Gabon 1995)

B


P9

ssRNA-

Filoviridae

Ebola-like

Sudan Ebola Virus

(Sudan 1976)

D


P9

ssRNA-

Filoviridae

Ebola-like

Zaire Ebola Virus

(Zaire 1976)

D


P9

ssRNA-

Filoviridae

Ebola-like

Zaire Ebola Virus

(Gabon 2001)

B


P9

ssRNA-

Filoviridae

Ebola-like

Cote d'Ivoire Ebola Virus

(Ivory Coast1995)


P9

ssRNA-

Filoviridae

Marburg-like

Marburg Virus (Popp)

D

Other isolate

P9

ssRNA-

Filoviridae

Marburg-like

Marburg Virus (Mukose)

D


P9

ssRNA-

Paramyxoviridae

Henipavirus

Nipah Virus 050699

D

_

P10

ssRNA+

Astroviridae

Astrovirus

Human Astrovirus 1

D

Human Astrovirus 2,3,4,5,6 or 8

P10

ssRNA+

Astroviridae

Astrovirus

Ovine Astrovirus

D

_

P10

ssRNA+

Astroviridae

Astrovirus

Avian Nephritis Astrovirus

D

_

P10

ssRNA+

Astroviridae

Astrovirus

Turkey Astrovirus

D

_

P10

ssRNA+

Caliciviridae

Norovirus

Norwalk (UK 1991) Virus

B

Other isolate

P10

ssRNA+

Caliciviridae

Norovirus

Norwalk (Mexico 1989) Virus

B


P10

ssRNA+

Caliciviridae

Norovirus

not classified

A

_

P10

ssRNA+

Caliciviridae

Sapovirus

Sapporo Virus (UK 1998)

D

Other isolate

P10

ssRNA+

Caliciviridae

Sapovirus

Sapporo Virus (France 1998)

B


P10

ssRNA+

Caliciviridae

Sapovirus

Sapporo Virus (UK 1993)

B


P10

ssRNA+

Caliciviridae

Vesivirus

Feline Calicivirus

D

Vesicular Exanthema of Swine Virus



Postscript

 

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